::clydelion
@echo off
set dir1=In
set dir2=Out
set /a count=0 
cd "%~dp0"

:: Replicate tree
if not exist "%dir1%" md "%dir1%"
if not exist "%dir2%" md "%dir2%"
xcopy /t /e "%dir1%" "%dir2%"

:: Get length of absolute path of %dir1%
<nul set /p "=%cd%\%dir1%" >getLength.tmp
for %%F in (getLength.tmp) do set len=%%~zF
del getLength.tmp

:: Process the files
for /r "%dir1%" %%F in (*) do (
  set "src=%%F"
  setlocal enableDelayedExpansion
  echo|set /p=Encrypting !src:~%len%!......
  Protector.exe "!src!" "%dir2%!src:~%len%!"
  echo DONE.
  endlocal enableDelayedExpansion
  SET /a count+=1
)
echo(
echo Done encrypting (%count%) files!
echo(
pause